11. – 13. June 2018

Poster sessions

Monday, 11. June

P-01
Study of GR morphs using conformal classification to define applicability domain
Agea Lorente Maria Isabel, Department of Informatics and Chemistry, UCT, Prague
abstract

P-02
Genomic (un)stability in hybridogenetic clonal forms of European loaches (genus Cobitis)
Bartoš Oldřich, ÚŽFG AV ČR, v. v. i., Liběchov
abstract

P-03
StReC: Tool for Prediction of Selectivity of Steroid Receptors
Bazgier Václav, Katedra fyzikální chemie, Přírodovědecká fakulta, Univerzita Palackého v Olomouci, Olomouc
abstract

P-04
Dante - genotyping of complex and expanded short tandem repetitions
Budiš Jaroslav, Geneton s.r.o., Bratislava
abstract

P-05
Database tools and other software for the study of transposable elements
Červeňanský Michal, Institute of the Biophysics of the Czech Academy of Sciences, Banka
abstract

P-06
The speech of structural patterns
Čmelo Ivan, VŠCHT Praha, Praha 6
abstract

P-07
Approximate string matching approaches for genomic data
Cvacho Ondřej, Czech technical university in Prague, Praha
abstract

P-08
QSAR affinity fingerprints: Further exploration of chemogenomic space
Dehaen Wim, VSCHT PRAHA, Praha
abstract

P-09
Effect of temperature on DNA structure
Dohnalová Hana, VŠCHT Praha, Praha
abstract

P-10
Efficient algorithm for compound elemental composition prediction in biological matrices
Doležalová Marie, Biologické centrum AV ČR, v. v. i., České Budějovice
abstract

P-11
Size-inferred analysis of fetal and maternal signals in noninvasive prenatal testing
Duris Frantisek, Geneton s.r.o., Bratislava
abstract

P-12
Genome-wide identification of meiotic non-crossovers in mice
Gergelits Václav, Ústav molekulární genetiky AV ČR, v. v. i., Praha 4
abstract

P-14
Variant Annotation Filtering and Prioritization
Hekel Rastislav, Geneton s.r.o., Bratislava
abstract

P-15
Prediction of protein solubility
Hon Jiří, Přírodovědecká fakulta, Masarykova Univerzita, Brno
abstract

P-16
Validation information in the Protein Data Bank: What is it and why should you care?
Horský Vladimír, CEITEC MU, Brno
abstract

P-17
Variant Calling based on CNN
Hrbek Lukáš, České vysoké učení technické v Praze, Praha 6
abstract

P-18
NGS-based methylation analysis provides insight into the epigenetic landscape of currently endogenizing mule deer gammaretrovirus
Hron Tomas, HPST, s. r. o., Praha
abstract

P-19
Protein family based 2D Diagrams of Secondary Structure Elements
Hutařová Vařeková Ivana, Masaryk University, Brno
abstract

P-22
Framework for knowledge-based prediction of protein-protein interaction sites
Jelínek Jan, Charles University, Faculty of Mathematics and Physics, Praha 2
abstract

P-23
Real-time impedance based cell assays in bioactivity screening
Kahle Michal, Institute of Molecular Genetics of the ASCR, Prague
abstract

P-24
Detection of distinct changes in gene-expression profiles in specimens of tumours and transition zones of tenascin-positive/-negative head and neck squamous cell carcinoma
Kolář Michal, Institute of Molecular Genetics ASCR, Prague 4
abstract

P-25
Towards universal platform for protein binding site prediction
Krivák Radoslav, Univerzita Karlova - MFF, Praha 1
abstract

P-26
Analyzing holobiontic association between host and microbiota in passerines
Kubovčiak Jan, Ústav molekulární genetiky AV ČR, v. v. i., Praha
abstract

P-27
Research projects focused Laboratory Information Management System
Lichvár Michal, Geneton s.r.o., Bratislava
abstract

P-28
Genomic single rule learning with an ontology-based refinement operator
Malinka František, Czech Technical University in Prague, Praha
abstract

P-31
HERVd update 2018
Moravčík Ondřej, Ústav molekulární genetiky AV ČR, v. v. i., Praha 4
abstract

P-32
ScreenX – integrated platform for collection and analysis of chemical compounds and HTS data
Müller Tomáš, Institute of Molecular Genetics of the ASCR, v. v. i., Prague
abstract

P-34
RepeatExplorer: Galaxy Server for In-Depth Characterization of Repetitive Sequences in Next-Generation Sequencing Data
Novák Petr, Biology Centre CAS, České Budějovice
abstract

P-43
Empirical methods for calculation of partial atomic charges – applicability for proteins?
Raček Tomáš, Masarykova univerzita, Nový Jičín
abstract

Tuesday, 12. June

P-21
How to predict structure of fused protein chimeras correctly?
Jarosilová Kateřina, Institute of Organic Chemistry and Biochemistry of the CAS, Prague
abstract

P-29
Interpretation of QSAR models: mining structural patterns taking into account molecular context
Matveieva Mariia, Ústav molekulární a translační medicíny Lékařská fakulta Univerzity Palackého v Olomouci, Olomouc
abstract

P-30
Automated Annotation of Secondary Structure Elements for Entire Protein Families
Midlik Adam, Masaryk University, Brno
abstract

P-33
MOLEonline and ChannelsDB - Tools and Database for Analysis of Biomacromolecular Channels, Tunnels and Pores
Navrátilová Veronika, Palacký University, Olomouc, Olomouc
abstract

P-35
MolMiner: an open-source tool and library for chemical entity extraction
Novotný Jiří, Institute of Molecular Genetics of the ASCR, v. v. i., Prague 4
abstract

P-36
Genomic evolution of Burkholderia cenocepacia ST32 during a decade of chronic CF infection
Nunvář Jaroslav, 2. lékařská fakulta UK, Praha
abstract

P-37
microRNA – are you real?!
Oppelt Jan, NCBR & CEITEC MU, Brno
abstract

P-38
Identification of genomic rearrangements in white blood cells of colorectal cancer patients
Ostašov Pavel, Lékařská fakulta v Plzni, Univerzita Karlova, Plzeň
abstract

P-40
Compound Management in context of employment of cheminformatic tools in practice
Popr Martin , Institute of Molecular Genetics of the ASCR, v. v. i., Prague
abstract

P-41
Does lipid metabolism affect centromeric heterochromatin function in fission yeast?
Převorovský Martin, Univerzita Karlova, Přírodovědecká fakulta, Praha 2
abstract

P-42
digIS: automated pipeline for detecting distant and novel insertion sequence elements in prokaryotes
Puterová Janka, Fakulta informačních technologií Vysoké učení technické v Brně, Brno
abstract

P-44
A pipeline for ncRNA sequence reconstruction and structure characterization of potential homologs from BLAST output
Schwarz Marek, Mikrobiologický ústav AV CR, Praha
abstract

P-45
Estradiol Dimer Inhibits Tubulin Polymerization and Microtubule Dynamics
Sedlák David, IMG AVCR, Prague
abstract

P-46
FAME 2: Simple and Effective Machine Learning Model of Cytochrome P450 Regioselectivity
Šícho Martin, UCT Prague, Prague
abstract

P-47
New Developments in the Molpher-lib Chemical Space Exploration Library: algorithms, substructure locking and programming interface
Šícho Martin, UCT Prague, Prague
abstract

P-48
Sequence based classification of bacteriophage
Smoľak Dávid, Geneton s. r. o., Bratislava
abstract

P-49
Report on Evaluating Quality and Reliability of the Next Generation Sequence Data with a Mock Community
Špánek Roman, TU v Liberci, Liberec
abstract

P-50
CAVERDOCK: A New Tool for Analysis of Ligand Transport Processes in Proteins Using Molecular Docking
Štourač Jan, Masarykova Univerzita - Přírodovědecká fakulta, Brno
abstract

P-51
Connection of glycoinformatics databases with Pubchem
Suchánková Pavla, Faculty of science Masaryk University, Brno
abstract

P-52
Changes in gene expression during immortalization of haematopoietic cells
Svatoňová Petra, Institute of Molecular Genetics of the ASCR, v. v. i., Prague
abstract

P-55
Correction of force field for drug-like molecules using property map collective variable
Trapl Dalibor, University of Chemistry and Technology, Praha
abstract

P-56
Into the wild: expression and characterization of random protein libraries
Treťjačenko Vjačeslav, Charles University, Prague
abstract

P-57
SEED 2: a user-friendly tool for amplicon high-throughput sequencing data analyses
Větrovský Tomáš, Institute of Microbiology CAS, Prague
abstract

P-58
SYBA: Fragment based prediction of hard-to-synthesize structures
Voršilák Milan, Institute of Molecular Genetics of the ASCR, v. v. i., Prague 4
abstract

P-59
Effect of phosphorylation on intrinsic conformational preferences of serine, threonine and tyrosine. A computational study.
Vymětal Jiří, Ústav Organické Chemie a Biochemie AVČR, Praha 6
abstract