11. – 13. June 2018
Programme
Participants: 95, Lectures: 24, Posters: 54
Monday, 11. June
| Registration and accomodation, 10:00-11:30 |
| Warm welcome |
| 12:45 |
Introduction
Daniel Svozil, University of Chemistry and Technology Prague & CZ-OPENSCREEN
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| Tools |
Chairman: Petr Novák, Biology Centre of the CAS, České Budějovice, CR |
| 13:00 |
fuzzyreg: An R package for fuzzy linear regression
Natália Martínková, The Czech Academy of Sciences, Institute of Vertebrate Biology, Brno, CR
abstract
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| 13:20 |
Using Simulations for Informed Design of Experiments
Martin Modrák, Institute of Microbiology of the Czech Academy of Sciences, Prague, CR
abstract
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| 13:40 |
MS-DIAL and MS-FINDER: Let’s Make Metabolomics Data Processing Great Again!
Tomáš Čajka, Institute of Physiology CAS, Department of Metabolomics, Prague, CR
abstract
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| 14:00 |
Metabolite Mapper (MM2) - Complex LC/GC HRMS tool for metabolomics data processing
Jan Fesl, Ústav aplikované informatiky, Jihočeská univerzita, České Budějovice, CR
abstract
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| Coffee break, 14:20-15:20 |
| Tools |
Chairman: Petr Novák, Biology Centre of the CAS, České Budějovice, CR |
| 15:20 |
PROFREP and DANTE: Repetitive elements annotation tools for genome assemblies
Nina Hoštáková, Biology Centre CAS, České Budějovice, CR
abstract,
presentation
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| 15:40 |
Bioinformatics platform for routine diagnostics of chronic lymphocytic leukemia patients
Tomáš Reigl, CEITEC MU, Brno, CR
abstract,
presentation
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| 16:00 |
An Automated Design of Thermostable Multiple-Point Mutants: Presenting FireProt
Miloš Musil, Masarykova univerzita, Přírodovědecká fakulta, Brno, CR
abstract,
presentation
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| 16:20 |
3DPatch: fast sequence and structure conservation annotation in a web browser
Dávid Jakubec, Institute of Organic Chemistry and Biochemistry of the CAS, Praha 6, CR
abstract,
presentation
screencast
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| 16:40 |
HotSpot Wizard 3.0: Sequence-based Design of Mutations and Smart Libraries
Lenka Sumbalová, Masarykova univerzita, Přírodovědecká fakulta, Brno, CR
abstract
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| Poster session, 19:00 - till complete exhaustion |
Poster session is sponsored by the National Infrastructure for Chemical Biology CZ-OPENSCREEN
and by the Protein Data Bank in Europe PDBe.
List of posters in this poster session. |
| 19:00 |
Poster telegrams
The authors of 10 selected posters will introduce their work in 3 minutes long presentations. Possible questions will be answered during a subsequent poster session.
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| 19:30 |
A dinner party
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Tuesday, 12. June
| Structures |
Chairman: Jiří Damborský, ICRC & Loschmidt Laboratories, Masaryk University, Brno, CR |
| 09:00 |
Mol*: Towards a common library for web molecular graphics and analysis tools
Alexander Rose, UC San Diego, San Diego, US
abstract
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| 09:20 |
Bringing together structure related functional annotations
Lukáš Pravda, Protein Data Bank in Europe, EMBL-EBI, Hinxton, UK
abstract,
presentation
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| 09:40 |
Molecular Transport in the view of Structural Bioinformatics & Chemoinformatics
Karel Berka, Palacky University, Olomouc, CR
abstract,
presentation
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| 10:00 |
Family-wide annotation and schematic 2D visualization of secondary structure elements
Radka Svobodová Vařeková, Masaryk University, Brno, CR
abstract,
presentation
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| Coffee break, 10:20-11:20 |
| Cheminformatics |
Chairman: Karel Berka, Palacky University, Olomouc, CR |
| 11:20 |
African Medicinal Plants: Natural Product Database Development, Lead Discovery and Toxicity Assessment
Fidele Ntie-Kang, University of Chemistry and Technology, Prague 6, CR
abstract,
presentation
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| 11:40 |
Probes & Drugs portal: an interactive, open data resource for chemical biology
Ctibor Škuta, CZ-OPENSCREEN, Institute of Molecular Genetics of the ASCR, v. v. i., Prague 4, CR
abstract,
presentation
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| 12:00 |
Sachem: A chemical cartridge for high-performance substructure search
Jakub Galgonek, Institute of Organic Chemistry and Biochemistry of the CAS, Praha, CR
abstract,
presentation
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| 12:20 |
Advances in interpretation of QSAR models
Pavlo Polishchuk, Ústav molekulární a translační medicíny, Univerzita Palackého v Olomouci, Olomouc, CR
abstract,
presentation
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| Leisure activities |
Possible sport activities
- runnig - we plan to go for a run, everybody is welcome, just don't forget your running shoes :-).
- tennis (2 tennis courts)
- volleyball
- foot tennis
- counter-current swimming pool (size 10x4 m) and whirlpool
- hiking - here are some tips (in Czech only)
Possible relaxation activities
- sauna
- massage
- billiard, pool
- and many more (in Czech only)
|
| Poster session, 19:00 - till complete exhaustion |
Poster session is sponsored by the National Infrastructure for Chemical Biology CZ-OPENSCREEN
and by the Protein Data Bank in Europe PDBe.
List of posters in this poster session. |
| 19:00 |
Poster telegrams
The authors of 10 selected posters will introduce their work in 3 minutes long presentations. Possible questions will be answered during a subsequent poster session.
|
| 19:30 |
Yeat another dinner party
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Wednesday, 13. June
| Sequences |
Chairman: Jan Pačes, Institute of Molecular Genetics AS CR, Prague, CZ |
| 09:00 |
Isometric gene tree reconciliation revisited
Bronislava Brejová, Fakulta matematiky, fyziky a informatiky, Univerzita Komenského v Bratislave, Bratislava, SR
abstract
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| 09:20 |
Analyzing Raw Signal from MinION Sequencers
Tomáš Vinař, Univerzita Komenského v Bratislave, Fakulta matematiky, fyziky a informatiky, Bratislava, SR
abstract
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| 09:40 |
G-quadruplex forming sequences in nucleic acids and their detection in-silico
Matej Lexa, Masaryk University, Brno, CR
abstract
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| Coffee break, 10:00-11:00 |
| Sequences |
Chairman: Jan Pačes, Institute of Molecular Genetics AS CR, Prague, CZ |
| 11:00 |
Shedding light on the “index hopping” problem in Illumina sequencing technology for amplicon data
Daniel Kumazawa Morais, Institute of Microbiology of the CAS, Prague 4, CR
abstract,
presentation
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| 11:20 |
Assembling diploid genome of Cobitis taenia using Illumina short reads
Martin Mokrejš, IT4Innovations, VŠB – Technical University of Ostrava, Ostrava, CR
abstract,
presentation
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| 11:40 |
Detection of selection pressure in human genome
Edvard Ehler, Institute of Molecular Genetics, ASCR, Praha 4, CR
abstract
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| 12:00 |
Detecting natural selection signal in bat DNA sequences after exposure to white-nose syndrome
Markéta Harazim, Institute of Vertebrate Biology, The Czech Academy of Sciences, Brno, CR
abstract,
presentation
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| Happy ending |
| 12:20 |
Student poster prize awards
Michal Kolář, Institute of Molecular Genetics AS CR, Prague
Concluding remarks
Daniel Svozil, University of Chemistry and Technology Prague & CZ-OPENSCREEN
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