Poster sessions
Monday, 11. June
P-01
Study of GR morphs using conformal classification to define applicability domain
Agea Lorente Maria Isabel, Department of Informatics and Chemistry, UCT, Prague
abstract
P-02
Genomic (un)stability in hybridogenetic clonal forms of European loaches (genus Cobitis)
Bartoš Oldřich, ÚŽFG AV ČR, v. v. i., Liběchov
abstract
P-03
StReC: Tool for Prediction of Selectivity of Steroid Receptors
Bazgier Václav, Katedra fyzikální chemie, Přírodovědecká fakulta, Univerzita Palackého v Olomouci, Olomouc
abstract
P-04
Dante - genotyping of complex and expanded short tandem repetitions
Budiš Jaroslav, Geneton s.r.o., Bratislava
abstract
P-05
Database tools and other software for the study of transposable elements
Červeňanský Michal, Institute of the Biophysics of the Czech Academy of Sciences, Banka
abstract
P-06
The speech of structural patterns
Čmelo Ivan, VŠCHT Praha, Praha 6
abstract
P-07
Approximate string matching approaches for genomic data
Cvacho Ondřej, Czech technical university in Prague, Praha
abstract
P-08
QSAR affinity fingerprints: Further exploration of chemogenomic space
Dehaen Wim, VSCHT PRAHA, Praha
abstract
P-09
Effect of temperature on DNA structure
Dohnalová Hana, VŠCHT Praha, Praha
abstract
P-10
Efficient algorithm for compound elemental composition prediction in biological matrices
Doležalová Marie, Biologické centrum AV ČR, v. v. i., České Budějovice
abstract
P-11
Size-inferred analysis of fetal and maternal signals in noninvasive prenatal testing
Duris Frantisek, Geneton s.r.o., Bratislava
abstract
P-12
Genome-wide identification of meiotic non-crossovers in mice
Gergelits Václav, Ústav molekulární genetiky AV ČR, v. v. i., Praha 4
abstract
P-13
Error rate improvement of Oxford Nanopore minION using rolling circle amplification.
Hejret Václav, Masarykova univerzita CEITEC MU , Brno
abstract
P-14
Variant Annotation Filtering and Prioritization
Hekel Rastislav, Geneton s.r.o., Bratislava
abstract
P-15
Prediction of protein solubility
Hon Jiří, Přírodovědecká fakulta, Masarykova Univerzita, Brno
abstract
P-16
Validation information in the Protein Data Bank: What is it and why should you care?
Horský Vladimír, CEITEC MU, Brno
abstract
P-17
Variant Calling based on CNN
Hrbek Lukáš, České vysoké učení technické v Praze, Praha 6
abstract
P-18
NGS-based methylation analysis provides insight into the epigenetic landscape of currently endogenizing mule deer gammaretrovirus
Hron Tomas, HPST, s. r. o., Praha
abstract
P-19
Protein family based 2D Diagrams of Secondary Structure Elements
Hutařová Vařeková Ivana, Masaryk University, Brno
abstract
P-22
Framework for knowledge-based prediction of protein-protein interaction sites
Jelínek Jan, Charles University, Faculty of Mathematics and Physics, Praha 2
abstract
P-23
Real-time impedance based cell assays in bioactivity screening
Kahle Michal, Institute of Molecular Genetics of the ASCR, Prague
abstract
P-24
Detection of distinct changes in gene-expression profiles in specimens of tumours and transition zones of tenascin-positive/-negative head and neck squamous cell carcinoma
Kolář Michal, Institute of Molecular Genetics ASCR, Prague 4
abstract
P-25
Towards universal platform for protein binding site prediction
Krivák Radoslav, Univerzita Karlova - MFF, Praha 1
abstract
P-26
Analyzing holobiontic association between host and microbiota in passerines
Kubovčiak Jan, Ústav molekulární genetiky AV ČR, v. v. i., Praha
abstract
P-27
Research projects focused Laboratory Information Management System
Lichvár Michal, Geneton s.r.o., Bratislava
abstract
P-28
Genomic single rule learning with an ontology-based refinement operator
Malinka František, Czech Technical University in Prague, Praha
abstract
P-31
HERVd update 2018
Moravčík Ondřej, Ústav molekulární genetiky AV ČR, v. v. i., Praha 4
abstract
P-32
ScreenX – integrated platform for collection and analysis of chemical compounds and HTS data
Müller Tomáš, Institute of Molecular Genetics of the ASCR, v. v. i., Prague
abstract
P-34
RepeatExplorer: Galaxy Server for In-Depth Characterization of Repetitive Sequences in Next-Generation Sequencing Data
Novák Petr, Biology Centre CAS, České Budějovice
abstract
Study of GR morphs using conformal classification to define applicability domain
Agea Lorente Maria Isabel, Department of Informatics and Chemistry, UCT, Prague
abstract
P-02
Genomic (un)stability in hybridogenetic clonal forms of European loaches (genus Cobitis)
Bartoš Oldřich, ÚŽFG AV ČR, v. v. i., Liběchov
abstract
P-03
StReC: Tool for Prediction of Selectivity of Steroid Receptors
Bazgier Václav, Katedra fyzikální chemie, Přírodovědecká fakulta, Univerzita Palackého v Olomouci, Olomouc
abstract
P-04
Dante - genotyping of complex and expanded short tandem repetitions
Budiš Jaroslav, Geneton s.r.o., Bratislava
abstract
P-05
Database tools and other software for the study of transposable elements
Červeňanský Michal, Institute of the Biophysics of the Czech Academy of Sciences, Banka
abstract
P-06
The speech of structural patterns
Čmelo Ivan, VŠCHT Praha, Praha 6
abstract
P-07
Approximate string matching approaches for genomic data
Cvacho Ondřej, Czech technical university in Prague, Praha
abstract
P-08
QSAR affinity fingerprints: Further exploration of chemogenomic space
Dehaen Wim, VSCHT PRAHA, Praha
abstract
P-09
Effect of temperature on DNA structure
Dohnalová Hana, VŠCHT Praha, Praha
abstract
P-10
Efficient algorithm for compound elemental composition prediction in biological matrices
Doležalová Marie, Biologické centrum AV ČR, v. v. i., České Budějovice
abstract
P-11
Size-inferred analysis of fetal and maternal signals in noninvasive prenatal testing
Duris Frantisek, Geneton s.r.o., Bratislava
abstract
P-12
Genome-wide identification of meiotic non-crossovers in mice
Gergelits Václav, Ústav molekulární genetiky AV ČR, v. v. i., Praha 4
abstract
P-13
Error rate improvement of Oxford Nanopore minION using rolling circle amplification.
Hejret Václav, Masarykova univerzita CEITEC MU , Brno
abstract
P-14
Variant Annotation Filtering and Prioritization
Hekel Rastislav, Geneton s.r.o., Bratislava
abstract
P-15
Prediction of protein solubility
Hon Jiří, Přírodovědecká fakulta, Masarykova Univerzita, Brno
abstract
P-16
Validation information in the Protein Data Bank: What is it and why should you care?
Horský Vladimír, CEITEC MU, Brno
abstract
P-17
Variant Calling based on CNN
Hrbek Lukáš, České vysoké učení technické v Praze, Praha 6
abstract
P-18
NGS-based methylation analysis provides insight into the epigenetic landscape of currently endogenizing mule deer gammaretrovirus
Hron Tomas, HPST, s. r. o., Praha
abstract
P-19
Protein family based 2D Diagrams of Secondary Structure Elements
Hutařová Vařeková Ivana, Masaryk University, Brno
abstract
P-22
Framework for knowledge-based prediction of protein-protein interaction sites
Jelínek Jan, Charles University, Faculty of Mathematics and Physics, Praha 2
abstract
P-23
Real-time impedance based cell assays in bioactivity screening
Kahle Michal, Institute of Molecular Genetics of the ASCR, Prague
abstract
P-24
Detection of distinct changes in gene-expression profiles in specimens of tumours and transition zones of tenascin-positive/-negative head and neck squamous cell carcinoma
Kolář Michal, Institute of Molecular Genetics ASCR, Prague 4
abstract
P-25
Towards universal platform for protein binding site prediction
Krivák Radoslav, Univerzita Karlova - MFF, Praha 1
abstract
P-26
Analyzing holobiontic association between host and microbiota in passerines
Kubovčiak Jan, Ústav molekulární genetiky AV ČR, v. v. i., Praha
abstract
P-27
Research projects focused Laboratory Information Management System
Lichvár Michal, Geneton s.r.o., Bratislava
abstract
P-28
Genomic single rule learning with an ontology-based refinement operator
Malinka František, Czech Technical University in Prague, Praha
abstract
P-31
HERVd update 2018
Moravčík Ondřej, Ústav molekulární genetiky AV ČR, v. v. i., Praha 4
abstract
P-32
ScreenX – integrated platform for collection and analysis of chemical compounds and HTS data
Müller Tomáš, Institute of Molecular Genetics of the ASCR, v. v. i., Prague
abstract
P-34
RepeatExplorer: Galaxy Server for In-Depth Characterization of Repetitive Sequences in Next-Generation Sequencing Data
Novák Petr, Biology Centre CAS, České Budějovice
abstract
Tuesday, 12. June
P-20
Bioinformatics tools for whole transcriptome sequencing data analysis in leukemia patients with complex structural variants
Hynšt Jakub, Masaryk university, CEITEC MU, Brno
abstract
P-21
How to predict structure of fused protein chimeras correctly?
Jarosilová Kateřina, Institute of Organic Chemistry and Biochemistry of the CAS, Prague
abstract
P-29
Interpretation of QSAR models: mining structural patterns taking into account molecular context
Matveieva Mariia, Ústav molekulární a translační medicíny Lékařská fakulta Univerzity Palackého v Olomouci, Olomouc
abstract
P-30
Automated Annotation of Secondary Structure Elements for Entire Protein Families
Midlik Adam, Masaryk University, Brno
abstract
P-33
MOLEonline and ChannelsDB - Tools and Database for Analysis of Biomacromolecular Channels, Tunnels and Pores
Navrátilová Veronika, Palacký University, Olomouc, Olomouc
abstract
P-35
MolMiner: an open-source tool and library for chemical entity extraction
Novotný Jiří, Institute of Molecular Genetics of the ASCR, v. v. i., Prague 4
abstract
P-36
Genomic evolution of Burkholderia cenocepacia ST32 during a decade of chronic CF infection
Nunvář Jaroslav, 2. lékařská fakulta UK, Praha
abstract
P-37
microRNA – are you real?!
Oppelt Jan, NCBR & CEITEC MU, Brno
abstract
P-38
Identification of genomic rearrangements in white blood cells of colorectal cancer patients
Ostašov Pavel, Lékařská fakulta v Plzni, Univerzita Karlova, Plzeň
abstract
P-39
HERVd update 2018
Pačes Jan, Institute of Molecular Genetics AS CR, Praha
abstract
P-40
Compound Management in context of employment of cheminformatic tools in practice
Popr Martin , Institute of Molecular Genetics of the ASCR, v. v. i., Prague
abstract
P-41
Does lipid metabolism affect centromeric heterochromatin function in fission yeast?
Převorovský Martin, Univerzita Karlova, Přírodovědecká fakulta, Praha 2
abstract
P-42
digIS: automated pipeline for detecting distant and novel insertion sequence elements in prokaryotes
Puterová Janka, Fakulta informačních technologií Vysoké učení technické v Brně, Brno
abstract
P-43
Empirical methods for calculation of partial atomic charges – applicability for proteins?
Raček Tomáš, Masarykova univerzita, Nový Jičín
abstract
P-44
A pipeline for ncRNA sequence reconstruction and structure characterization of potential homologs from BLAST output
Schwarz Marek, Mikrobiologický ústav AV CR, Praha
abstract
P-45
Estradiol Dimer Inhibits Tubulin Polymerization and Microtubule Dynamics
Sedlák David, IMG AVCR, Prague
abstract
P-46
FAME 2: Simple and Effective Machine Learning Model of Cytochrome P450 Regioselectivity
Šícho Martin, UCT Prague, Prague
abstract
P-47
New Developments in the Molpher-lib Chemical Space Exploration Library: algorithms, substructure locking and programming interface
Šícho Martin, UCT Prague, Prague
abstract
P-48
Sequence based classification of bacteriophage
Smoľak Dávid, Geneton s. r. o., Bratislava
abstract
P-49
Report on Evaluating Quality and Reliability of the Next Generation Sequence Data with a Mock Community
Špánek Roman, TU v Liberci, Liberec
abstract
P-50
CAVERDOCK: A New Tool for Analysis of Ligand Transport Processes in Proteins Using Molecular Docking
Štourač Jan, Masarykova Univerzita - Přírodovědecká fakulta, Brno
abstract
P-51
Connection of glycoinformatics databases with Pubchem
Suchánková Pavla, Faculty of science Masaryk University, Brno
abstract
P-52
Changes in gene expression during immortalization of haematopoietic cells
Svatoňová Petra, Institute of Molecular Genetics of the ASCR, v. v. i., Prague
abstract
P-53
Analyzing and exploiting somatic mutational profiles from the whole exome sequencing data of chronic lymphocytic leukemia for precise patient stratification
Tauš Petr, CEITEC Masaryk University, Brno
abstract
P-54
Bioinformatic analysis of microRNAs and long non-coding RNAs in malignant B cells
Trachtová Karolína, Masarykova Univerzita CEITEC MU, Brno
abstract
P-55
Property map collective variable as a useful tool for force field correction
Trapl Dalibor, University of Chemistry and Technology, Praha
abstract
P-56
Into the wild: expression and characterization of random protein libraries
Treťjačenko Vjačeslav, Charles University, Prague
abstract
P-57
SEED 2: a user-friendly tool for amplicon high-throughput sequencing data analyses
Větrovský Tomáš, Institute of Microbiology CAS, Prague
abstract
P-58
SYBA: Fragment based prediction of hard-to-synthesize structures
Voršilák Milan, Institute of Molecular Genetics of the ASCR, v. v. i., Prague 4
abstract
P-59
Effect of phosphorylation on intrinsic conformational preferences of serine, threonine and tyrosine. A computational study.
Vymětal Jiří, Ústav Organické Chemie a Biochemie AVČR, Praha 6
abstract
Bioinformatics tools for whole transcriptome sequencing data analysis in leukemia patients with complex structural variants
Hynšt Jakub, Masaryk university, CEITEC MU, Brno
abstract
P-21
How to predict structure of fused protein chimeras correctly?
Jarosilová Kateřina, Institute of Organic Chemistry and Biochemistry of the CAS, Prague
abstract
P-29
Interpretation of QSAR models: mining structural patterns taking into account molecular context
Matveieva Mariia, Ústav molekulární a translační medicíny Lékařská fakulta Univerzity Palackého v Olomouci, Olomouc
abstract
P-30
Automated Annotation of Secondary Structure Elements for Entire Protein Families
Midlik Adam, Masaryk University, Brno
abstract
P-33
MOLEonline and ChannelsDB - Tools and Database for Analysis of Biomacromolecular Channels, Tunnels and Pores
Navrátilová Veronika, Palacký University, Olomouc, Olomouc
abstract
P-35
MolMiner: an open-source tool and library for chemical entity extraction
Novotný Jiří, Institute of Molecular Genetics of the ASCR, v. v. i., Prague 4
abstract
P-36
Genomic evolution of Burkholderia cenocepacia ST32 during a decade of chronic CF infection
Nunvář Jaroslav, 2. lékařská fakulta UK, Praha
abstract
P-37
microRNA – are you real?!
Oppelt Jan, NCBR & CEITEC MU, Brno
abstract
P-38
Identification of genomic rearrangements in white blood cells of colorectal cancer patients
Ostašov Pavel, Lékařská fakulta v Plzni, Univerzita Karlova, Plzeň
abstract
P-39
HERVd update 2018
Pačes Jan, Institute of Molecular Genetics AS CR, Praha
abstract
P-40
Compound Management in context of employment of cheminformatic tools in practice
Popr Martin , Institute of Molecular Genetics of the ASCR, v. v. i., Prague
abstract
P-41
Does lipid metabolism affect centromeric heterochromatin function in fission yeast?
Převorovský Martin, Univerzita Karlova, Přírodovědecká fakulta, Praha 2
abstract
P-42
digIS: automated pipeline for detecting distant and novel insertion sequence elements in prokaryotes
Puterová Janka, Fakulta informačních technologií Vysoké učení technické v Brně, Brno
abstract
P-43
Empirical methods for calculation of partial atomic charges – applicability for proteins?
Raček Tomáš, Masarykova univerzita, Nový Jičín
abstract
P-44
A pipeline for ncRNA sequence reconstruction and structure characterization of potential homologs from BLAST output
Schwarz Marek, Mikrobiologický ústav AV CR, Praha
abstract
P-45
Estradiol Dimer Inhibits Tubulin Polymerization and Microtubule Dynamics
Sedlák David, IMG AVCR, Prague
abstract
P-46
FAME 2: Simple and Effective Machine Learning Model of Cytochrome P450 Regioselectivity
Šícho Martin, UCT Prague, Prague
abstract
P-47
New Developments in the Molpher-lib Chemical Space Exploration Library: algorithms, substructure locking and programming interface
Šícho Martin, UCT Prague, Prague
abstract
P-48
Sequence based classification of bacteriophage
Smoľak Dávid, Geneton s. r. o., Bratislava
abstract
P-49
Report on Evaluating Quality and Reliability of the Next Generation Sequence Data with a Mock Community
Špánek Roman, TU v Liberci, Liberec
abstract
P-50
CAVERDOCK: A New Tool for Analysis of Ligand Transport Processes in Proteins Using Molecular Docking
Štourač Jan, Masarykova Univerzita - Přírodovědecká fakulta, Brno
abstract
P-51
Connection of glycoinformatics databases with Pubchem
Suchánková Pavla, Faculty of science Masaryk University, Brno
abstract
P-52
Changes in gene expression during immortalization of haematopoietic cells
Svatoňová Petra, Institute of Molecular Genetics of the ASCR, v. v. i., Prague
abstract
P-53
Analyzing and exploiting somatic mutational profiles from the whole exome sequencing data of chronic lymphocytic leukemia for precise patient stratification
Tauš Petr, CEITEC Masaryk University, Brno
abstract
P-54
Bioinformatic analysis of microRNAs and long non-coding RNAs in malignant B cells
Trachtová Karolína, Masarykova Univerzita CEITEC MU, Brno
abstract
P-55
Property map collective variable as a useful tool for force field correction
Trapl Dalibor, University of Chemistry and Technology, Praha
abstract
P-56
Into the wild: expression and characterization of random protein libraries
Treťjačenko Vjačeslav, Charles University, Prague
abstract
P-57
SEED 2: a user-friendly tool for amplicon high-throughput sequencing data analyses
Větrovský Tomáš, Institute of Microbiology CAS, Prague
abstract
P-58
SYBA: Fragment based prediction of hard-to-synthesize structures
Voršilák Milan, Institute of Molecular Genetics of the ASCR, v. v. i., Prague 4
abstract
P-59
Effect of phosphorylation on intrinsic conformational preferences of serine, threonine and tyrosine. A computational study.
Vymětal Jiří, Ústav Organické Chemie a Biochemie AVČR, Praha 6
abstract