09. – 11. June 2025
Programme
Participants: 67, Lectures: 24, Posters: 25
Monday, 9. June
| Registration and accomodation, 10:00-11:30 |
| Warm welcome |
| 12:45 |
Introduction
Daniel Svozil, University of Chemistry and Technology Prague & CZ-OPENSCREEN
|
|
| Sequences |
Chairman: David Hoksza, Faculty of Mathematics and Physics, Charles University Prague |
| 13:00 |
Efficient Analysis of Genome Annotation Colocalization
Broňa Brejová, Univerzita Komenského v Bratislave, Bratislava
|
| 13:20 |
Elastic-Degenerate Strings in Bioinformatics: Motivation and Open Problems
Dominika Bohuslavová, Czech Technical University in Prague, Faculty of Information Technology, Prague 6
|
| 13:40 |
Plasmid Identification Through Graph Neural Networks
Tomáš Vinař, Univerzita Komenského v Bratislave, Bratislava
|
| 14:00 |
Cryptic binding site detection with protein language models
Vít Škrhák, Charles University, MFF, Praha 1
|
|
| Coffee break, 14:20-15:20 |
| Small molecules |
Chairman: Karel Berka, Palacky University Olomouc |
| 15:20 |
Handling Compound Promiscuity in CZ-OPENSCREEN
Adam Hanzlík, Ústav molekulární genetiky AV ČR, v.v.i., Praha 4 – Krč
|
| 15:40 |
QSPRpred, Spock and DrugEx: Developing an Open Source Ecosystem for Cheminformatics
Martin Šícho, VŠCHT Praha, Prague
|
| 16:00 |
Fragment-based de novo design and searching for hit molecules in ultra-large chemical libraries
Pavel Polishchuk, Palacky University, Faculty of Medicine and Dentistry, Olomouc
|
| 16:00 |
Ligand hallucinations in cofolding methods
Wim Dehaen, UCT Prague, Praha 6
|
| 16:20 |
Quantum-Mechanics Based Multiscale Modeling and Rational Design of Insulin Analogs with Improved Binding Affinities
Yevgen Yurenko, Institute of Organic Chemistry and Biochemistry, Prague, Prague
|
|
| Poster session, 19:00 - till complete exhaustion |
Poster session is sponsored by the National Infrastructure for Chemical Biology CZ-OPENSCREEN.
List of posters in this poster session. |
| 19:00 |
Poster telegrams
The authors of 5 selected posters will introduce their work in 5 minutes long presentations. Possible questions will be answered during a subsequent poster session.
|
| 19:30 |
Dinner party
|
|
Tuesday, 10. June
| Sequences |
Charmain: Karel Sedlář, Brno University of Technology |
| 09:00 |
Crazy avian genome, stuttering genes, and why we love nanopore
Tomas Hron, Institute of Molecular Genetics, AV CR, v.v.i., Prague
|
| 09:20 |
Structural variation in closely related songbird species
Zuzana Halenková, Faculty of Science, Charles University, Praha 2
|
| 09:40 |
Plasmid-Mediated Antibiotic Resistance Dynamics in Broiler Chickens Revealed by Long-Read Sequencing
Darina Čejková, Brno University of Technology, Brno
|
| 10:00 |
Analyzing Retrotransposons in RNA Data: Can I Hand It Over to AI or Do I Still Have to Work?
Pavel Ostašov, Faculty of Medicine in Pilsen, Pilsen
|
|
| Coffee break, 10:20-11:20 |
| Tools |
Chairman: Martin Šícho, University of Chemical Technology Prague |
| 11:20 |
5 years of Alphafoldology
Karel Berka, Palacky University Olomouc, Olomouc
|
| 11:40 |
MARTS-DB: The Mechanisms And Reactions of Terpene Synthases DataBase
Martin Engst, Ústav organické chemie a biochemie AV ČR, v. v. i., Praha 6
|
| 12:00 |
mutation_scatter_plot: Tackling codon usage analysis from a different angle
Martin Mokrejš, Charles University, First Faculty of Medicine, Prague
|
| 12:20 |
Predicting Gene Regulatory Networks with Augusta
Karel Sedlář, Vysoké učení technické v Brně, Brno
|
| 12:40 |
Negative Reference Extraction for Machine-Assisted Flow Cytometry Immunophenotyping
Karel Fišer, Univerzita Karlova, 2. lékařská fakulta, Praha
|
|
| Leisure activities |
During this time you can engage into activities unorganized by organizers. Below are some of the possibilities that the resort and the surrounding area offers:
- The hotel has a wide range of sports facilities, such as an indoor swimming pool, gym, fitness and more, see here.
- Wellness will be available at a discounted price.
- Adventure golf is located in Karlov pod Pradědem.
- The Jeseníky Protected Landscape Area offers a number of interesting hiking trails directly from the hotel.
|
| Poster session, 19:00 - till complete exhaustion |
Poster session is sponsored by the National Infrastructure for Chemical Biology CZ-OPENSCREEN.
List of posters in this poster session. |
| 19:00 |
Poster telegrams
The authors of 5 selected posters will introduce their work in 5 minutes long presentations. Possible questions will be answered during a subsequent poster session.
|
| 19:30 |
Yet another dinner party
|
|
Wednesday, 11. June
| Sequences |
Chairman: Martin Mokrejš, First Faculty of Medicine, Charles University Prague |
| 09:00 |
Modeling changes in cell populations between groups of samples of scRNA-seq data
Martin Modrák, Second Faculty of Medicine, Charles University in Prague, Praha 5
|
| 09:20 |
Ancient DNA Computational Genomics: Tracing Human Origins and Mobility in Prehistoric Europe
Edvard Ehler, Ústav molekulární genetiky AV ČR, v. v. i., Praha 4
|
| 09:40 |
Identifying intercellular patterns in Vestibular schwannoma
Lucie Pfeiferová, Ústav molekulární genetiky AV ČR, v. v. i., Praha 4
|
|
| Coffee break, 10:00-11:00 |
| Sequences |
Chairman: Tomáš Vinař, Comenius University Bratislava |
| 11:00 |
Bioinformatics approaches to studying the relationships between structure, function and evolution of amylolytic enzymes – the case of the alpha-amylase family GH57
Štefan Janeček, Institute of Molecular Biology, Slovak Academy of Sciences, Bratislava
|
| 11:20 |
Streamlined workflow for bacterial methylation analysis using nanopore data
Markéta Jakubíčková, Brno University of Technology, Department of Biomedical Engineering, Brno
|
| 11:40 |
Rapid genetic change in the passerine germline restricted chromosome
Stephen Schlebusch, Charles University, Prague 1
|
|
| Happy end |
| 12:00 |
Student poster prize awards
Edvard Ehler, Institute of Molecular Genetics AS CR, Prague
|
|
